00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111 00000000000111111111112222222222222233333333333333333344444444444444455555555555555555555556666666666666666667777777777777777777888888888888888888888999999999999999999000000001 55666788999114556778890011124666789900011223335777788901122245577889900111222333334445778890111122233456666880000111224445556669012223335555567777779001112234455677889000123441 14036467036177047782322803650017084504528144677458914625834977814096848015126014672393192912012848919811369230128147362590195678295891782567871456788372381561279659143058180120 -codon-position------------------------------ 22 12 12 11 2 1 12 1 1 2 1 11 1 12 1 1 122 12 2 2 11 1 212 121 1 1212 112 1 12 1 1 1 12 112 121 1 1 1 2 2 1 1 21 1 ---Index-------------------------------------CACTTCCAAGTGTGAGGTCAAGCGTCTATTGAGGAGTGCCCTGGCGTACTTTGATTATGCATATCCATGGATATGAAAGGCCACCGTATCTCATACGCCACGACGTGGAAAGCAGTGGACGGCTCATCTTAAGCAAAGGATCGGCCAAGATTATCACCCCACACGCAACACGGCCC 1 >A/Ck/Aguascalientes/124-3705/98(H5N2) T............AGAA.....T..TC..A...T....T.....A.C......C.C.C.GG..C..G.AAG.....T.........AG....GC..ATT...C.....T.GAT.A.A.....T...C..CG...........................T........CT..A...- 88 47 , 48 46 1:>A/Ck/Aguascalientes/124-3705/98(H5N2) 2 >A/Ck/Morelos/227-4353/98(H5N2) ..............GAA.....T..TC..A...T....T.....A.C......C.C.CAGG..C..G.AAG.....T.........AG.T..G...ATT...C.....T.GAT.A.A.....T...C..CG...........................T........CTC.A..T- 89 48 , 49 47 2:>A/Ck/Morelos/227-4353/98(H5N2) 3 >A/Ck/Jalisco/229-4592/98(H5N2) ..............GAA.....T..TC..A...T....T.....A.C......C.C.CAGG..C..G.AAG.....T.........AG.T..GC..ATT...C.....T.GAT.A.A.....T...C..CG...........................T........CT..A.TT- 90 49 , 50 48 3:>A/Ck/Jalisco/229-4592/98(H5N2) 4 >A/Ck/VeraCruz/232-6169/98(H5N2) ..........C.....A....AT...C..AA..T....T...T.A.C....C.C.C..AT...C..G.A.......T..A......A.....G..AATT.........T.GAT.AG..G...T...C..CG...G................C......A....T....TC.A.AT- 90 49 , 50 48 4:>A/Ck/VeraCruz/232-6169/98(H5N2) 5 >A/Ck/Puebla/231-5284/98(H5N2) ..........C.....A....AT...C..AA..T....T.....A.C....C.C.C..AT...C..G.A.G...A.T..A...A..A.....G..AAT..........T.GAT.A...G...T...C..CG...G......T.........C...........T....TC.A.AT- 92 49 , 52 48 5:>A/Ck/Puebla/231-5284/98(H5N2) 6 >A/Ck/Morelos/FO22189/98(H5N2) ..........C.....A....AT...C..AA..T....T.....A.C....C.C.C..AT...C..G.A.G.....T..A......A..T..G..AAT..........T.GAT.A...G...T...C..CG...G................C................TC.A..T- 87 45 , 47 44 6:>A/Ck/Morelos/FO22189/98(H5N2) 7 >A/Ck/Chiapas/15406/97(H5N2) ..........C.....A....AT...C..AA..T.A..T.....A.C......C.C..AT...C..G.A.G.....T..A............G..AAT..........T.GAT.A.......T...C..CG....................C................TC.A..T- 81 41 , 41 40 7:>A/Ck/Chiapas/15406/97(H5N2) 8 >A/Ck/Chiapas/15408/97(H5N2) ....A.....C.....A....AT...C..AA..T.A..T.....A.C......C.C..AT...C..G.A.G.....T..A............G..AAT..........T.GAT.A.......T...C..CG....................C................TC.A..T- 85 42 , 45 41 8:>A/Ck/Chiapas/15408/97(H5N2) 9 >A/Ck/Mexico/37821-771/96(H5N2) ................A.....T...C.....A.....T.....T.C......................A...A...........A......G....T..........T.GAT.A...........C......................................A..T......- 75 21 , 35 20 9:>A/Ck/Mexico/37821-771/96(H5N2) 10 >A/Ck/Puebla/8623-607/94(H5N2) ....A...........A.A.......C....G......T........G....A.CA.....C..................................AT......A.A....ATCA.A....T..AT.......A..T...G...T.TC.CAG...TT....A...T......A..- 77 38 , 37 37 10:>A/Ck/Puebla/8623-607/94(H5N2) 11 >A/Ck/Puebla/8624-604/94(H5N2) ........G.......A.A.......C....G......T........G....A.CA.....C..................................AT......A.A....ATCA.A....T..AT.......AG.T...G...T.TCACAG...TT....A...T......A..- 80 40 , 40 39 11:>A/Ck/Puebla/8624-604/94(H5N2) 12 >A/Ck/Puebla/14586-654/94(H5N2) .......C........A.A.......C....G......T........G....A.CA.....C............A.....................AT......A.A....AT.A.A....T..AT.......A..T..CG...T.TCACAG...TTAG..A...T......A..- 84 42 , 44 41 12:>A/Ck/Puebla/14586-654/94(H5N2) 13 >A/Ck/Puebla/14585-622/94(H5N2) ................A.A.......C....G......T........G....A.CA.....C............A.....................AT......A.A....AT.A.A....T..AT.......A..T..C....T.TCACAG...TTA...A...T......A..- 83 39 , 43 38 13:>A/Ck/Puebla/14585-622/94(H5N2) 14 >A/Ck/Puebla/8623-607/94(H5N2) ................A.A.......C....G......T........G....A.CA.....C............A.....................AT......A.A....AT.A.A....T..AT.......A................A.....T....A...T......A... 58 28 , 30 28 14:>A/Ck/Puebla/8623-607/94(H5N2) 15 >A/Ck/Queretaro/7653-20/95(H5N2) ..................................G.....T..A................T......C...............TT..................T..A................C..AT.....T....A....A.......G..T.T.T.....AT......A..T 43 23 , 39 23 15:>A/Ck/Queretaro/7653-20/95(H5N2) 16 >A/Ck/Queretaro/14588-19/95(H5N2) ............C..............................A................T......C....G..........TT..................T..A................C..AT..........A....A..........T.T.T.....AT......A..T 49 21 , 21 21 16:>A/Ck/Queretaro/14588-19/95(H5N2) 17 >A/Ck/Queretaro/14588-19/94(H5N2) ............C..............................A................T......C....G..........TT..................T..A................C..AT..........A....A..........T.T.T.....AT......A..- 60 21 , 20 20 17:>A/Ck/Queretaro/14588-19/94(H5N2) 18 >A/Ck/Queretaro/22019-853/96(H5N2) ............C..............................A................T......C......A........TT.....................A................C..AT..........A....A..........T.T.T.....AT......A..- 62 20 , 22 19 18:>A/Ck/Queretaro/22019-853/96(H5N2) 19 >A/Ck/Jalisco/14585-660/94(H5N2) ............C..............................A..................T..T.C......A........TT.....G..........T.....................C..A...........A.................T.T.....A....G.....- 57 18 , 17 17 19:>A/Ck/Jalisco/14585-660/94(H5N2) 20 >A/Ck/Hidalgo/28159-460/95(H5N2) ............C..............................A..................T..T.C...............TT.....G..........T..................A..C..A...........A.................T.T.....A..........- 58 17 , 18 16 20:>A/Ck/Hidalgo/28159-460/95(H5N2) 21 >A/Ck/Jalisco/28159-600/95(H5N2) ............C..............................A..................T..T.C...............TT.....G..........T.....................C..A...........A.................T.T.....A..........- 57 16 , 17 15 21:>A/Ck/Jalisco/28159-600/95(H5N2) 22 >A/Ck/Michoacan/28159-530/95(H5N2) ............C..............................A..................T....C.A..G..........TT......................................C..A...........A.................T.T....TA..........- 55 16 , 15 15 22:>A/Ck/Michoacan/28159-530/95(H5N2) 23 >A/Ck/Guanajuato/28159-331/95(H5N2) ............C..............................A...................C...C....G..........TT......................................C..A...........A.................T.TT....A..........- 56 15 , 16 14 23:>A/Ck/Guanajuato/28159-331/95(H5N2) 24 >A/Ck/Mexico/31381-3/94(H5N2) ...........................................A...............T.......C....G...........T......................................C..A...........A.................T..................- 52 10 , 12 9 24:>A/Ck/Mexico/31381-3/94(H5N2) 25 >A/Ck/Mexico/31381-5/94(H5N2) ...........................................A..........................G....................................................C..............A.................T..................- 48 6 , 8 5 25:>A/Ck/Mexico/31381-5/94(H5N2) 26 >A/Ck/Mexico/31382-1/94(H5N2) ...........................................A.......................C....G..................................................C.......G......A.................T..................- 49 8 , 9 7 26:>A/Ck/Mexico/31382-1/94(H5N2) 27 >A/Ck/Mexico/31381-4/94(H5N2) ........................C..................A.......................C................T......................................C..A...........A......A..........T..................- 50 10 , 10 9 27:>A/Ck/Mexico/31381-4/94(H5N2) 28 >A/Ck/Mexico/31381-2/94(H5N2) GCT..T.....................................A.......................C......A.........T......................................C..A...........A......A..........T..................- 54 14 , 14 13 28:>A/Ck/Mexico/31381-2/94(H5N2) 29 >A/Ck/Mexico/31381-1/94(H5N2) GCT..T..G..............................T...A.......................C......A.........T......................................C..A...........A......A..........T..................- 56 16 , 16 15 29:>A/Ck/Mexico/31381-1/94(H5N2) 30 >A/Ck/Mexico/26654-1374/94(H5N2) GCTGCTG.G........G.TG......................A.T............................A................................................C..C...........A....................................- 60 18 , 20 17 30:>A/Ck/Mexico/26654-1374/94(H5N2) 31 >A/Ck/Hidalgo/26654-1368/94(H5N2) GCTGCTG.G........G.TG......................A.T............................A................................................C..C...........A....................................- 58 18 , 18 17 31:>A/Ck/Hidalgo/26654-1368/94(H5N2) 32 >A/Ck/VeraCruz/28159-398/95(H5N2) ...........................................A.T..........................G..................A...............................C..C...........A...............................T....- 48 9 , 8 8 32:>A/Ck/VeraCruz/28159-398/95(H5N2) 33 >A/Ck/Hidalgo/28159-232/94(H5N2) ...........................................A.T.........................C..A...A....................G.......................C..C...........A..................................... 15 9 , 15 9 33:>A/Ck/Hidalgo/28159-232/94(H5N2) 34 >A/Ck/Hidalgo/232/94(H5N2) ...........................................A...........................C..A...A....................G.......................C..C...........A....................................- 48 9 , 8 8 34:>A/Ck/Hidalgo/232/94(H5N2) 35 >A/Ck/Mexico/232/94(H5N2) ...........................................A..............................A..........A............................A........C..C...........A....................................- 47 8 , 7 7 35:>A/Ck/Mexico/232/94(H5N2) 36 >A/Ck/Queretaro/26654-1373/94(H5N2) ...........................................A..............................A..........A............................A........C..C.C.........A....................................- 48 9 , 8 8 36:>A/Ck/Queretaro/26654-1373/94(H5N2) 37 >A/Ck/Morelos/28159-538/95(H5N2) ...........................................A..............................A..........A............................A........C..G.C.........A....................................- 49 9 , 9 8 37:>A/Ck/Morelos/28159-538/95(H5N2) 38 >A/Ck/Chiapa/28159-488/95(H5N2) .....................................A.....A....................T....A........T..................T................A..A.........................................................- 54 9 , 14 8 38:>A/Ck/Chiapa/28159-488/95(H5N2) 39 >A/Ck/Mexico/28159-541/95(H5N2) ............................C...........................G.......T............C........A.C......A.T.....T.....C....AA.A............GG.T................................G........- 66 18 , 26 17 39:>A/Ck/Mexico/28159-541/95(H5N2) 40 >A/Ck/Mexico/15407/97(H5N2) ............................C............C......................T.........A...........A.C........T................A.AA.............G..................................G........- 52 13 , 12 12 40:>A/Ck/Mexico/15407/97(H5N2) 41 >A/Ck/Mexico/31381-7/94(H5N2) ....G..C....................C............C......................T.........A...........A.C........T................A.A..............G..................................G........- 55 14 , 15 13 41:>A/Ck/Mexico/31381-7/94(H5N2) 42 >A/Ck/Mexico/31381-8/94(H5N2) .......C............G...........A........................................A............A.....G........................A.........................................................- 53 8 , 13 7 42:>A/Ck/Mexico/31381-8/94(H5N2) 43 >A/Ck/Mexico/31381-6/94(H5N2) .......C.....................................................A...............C.......................................T.........................................................- 45 5 , 5 4 43:>A/Ck/Mexico/31381-6/94(H5N2) 44 >A/Ck/Mexico/31381-Avilab/94(H5N2) N............................................................................C.................................................................................................. 38 2 , 7 2 44:>A/Ck/Mexico/31381-Avilab/94(H5N2) 45 >A/Ck/Puebla/28159-474/95(H5N2) .........A...A.................G....CT....T.....TC........A...............AG...............................A.................T.....GA.........A..........C........G............- 59 19 , 19 18 45:>A/Ck/Puebla/28159-474/95(H5N2) 46 >A/Ck/Chiapas/15224/97(H5N2) .........A.A.A.............G...G....CT..T.T.....TC......G..................G....ATC...C....A.............C.A...........T.....T.....GA..G......A.........CC......G.G............- 70 31 , 30 30 46:>A/Ck/Chiapas/15224/97(H5N2) 47 >A/Ck/Chis/15224/97(H5N2) .........A.A.A.............G...G....CT..T.T.....TC......G..................G....ATC...C....N.............C.A...........T.....T.....GA..G......A.........CC......G.G............. 45 30 , 45 30 47:>A/Ck/Chis/15224/97(H5N2) 48 >A/Ck/chiapis/15224/97(H5) .........A.A.A.............G...G....CT..T.T.....TC......G..................G....ATC...C..................C.A...........T.....T.....GA..G......A.........CC......G.G........----- 74 34 , 29 29 48:>A/Ck/chiapis/15224/97(H5) 49 >A/Ck/Chiapas/15405/97(H5N2) .........A.A.A.............G...G....CT..T.T.....TC........A.............G..G....ATC...CG.T...............C.A.C.........T.....T.....GA..G......A.........CC......G.G............- 74 34 , 34 33 49:>A/Ck/Chiapas/15405/97(H5N2) 50 >A/Ck/FO/22066/98(H5N2) .........A.A.A.........AC..G...G..G.CT..T.T.....TCC.......A...............TG....A.C...C.......T.....T....C.A.C.........T.....T.....GA..G.T...TA..T......CC......G.G............- 79 40 , 39 39 50:>A/Ck/FO/22066/98(H5N2) 51 >A/Ck/Tabasco/234-8289/98(H5N2) .........A.A.A.........AC..G...G..G.CT.TT.T.....TCC.......A................G....A.C...C..T....T.....T....C.A.C.........T.....T.....GA..G.T...TA..T......CC......G.G............- 84 41 , 44 40 51:>A/Ck/Tabasco/234-8289/98(H5N2) 52 >A/Ck/Guatemala/45511-1/00(H5N2) .........A.A.A.............G...GT...CT..TCT.....TC........AT..C..T..A.G....GC...A.C...A..T...C....T.T......A.C.....A...TA....T.....GAA.G......A.........CC.....TG.GT....T.T...T- 100 49 , 60 48 52:>A/Ck/Guatemala/45511-1/00(H5N2) ---Index-------------------------------------CACTTCCAAGTGTGAGGTCAAGCGTCTATTGAGGAGTGCCCTGGCGTACTTTGATTATGCATATCCATGGATATGAAAGGCCACCGTATCTCATACGCCACGACGTGGAAAGCAGTGGACGGCTCATCTTAAGCAAAGGATCGGCCAAGATTATCACCCCACACGCAACACGGCCC -codon-position------------------------------ 22 12 12 11 2 1 12 1 1 2 1 11 1 12 1 1 122 12 2 2 11 1 212 121 1 1212 112 1 12 1 1 1 12 112 121 1 1 1 2 2 1 1 21 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111 00000000000111111111112222222222222233333333333333333344444444444444455555555555555555555556666666666666666667777777777777777777888888888888888888888999999999999999999000000001 55666788999114556778890011124666789900011223335777788901122245577889900111222333334445778890111122233456666880000111224445556669012223335555567777779001112234455677889000123441 14036467036177047782322803650017084504528144677458914625834977814096848015126014672393192912012848919811369230128147362590195678295891782567871456788372381561279659143058180120